Structure of PDB 5m9o Chain A

Receptor sequence

>5m9oA (length=216) Species: 9606 (Homo sapiens) [Search protein sequence]

SYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAP
RRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNV
EHLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLN
AQESAKSARLNLWRYG

3D structure

PDB

5m9o Crystal structure of human SND1 extended Tudor domain in complex with a symmetrically dimethylated E2F peptide

Chain

Resolution

1.45 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

3.1.31.1: micrococcal nuclease.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A	F686 F740 D742 Y746 Y763 Y766 N768	F6 F60 D62 Y66 Y83 Y86 N88

External links

PDB	RCSB:5m9o, PDBe:5m9o, PDBj:5m9o
PDBsum	5m9o
PubMed
UniProt	Q7KZF4\|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 (Gene Name=SND1)

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