Structure of PDB 1vev Chain A

Receptor sequence

>1vevA (length=171) Species: 173 (Leptospira interrogans) [Search protein sequence]

SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLA
APQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEG
CLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQG
ILYVDRLKDTKLFGFNETLDS

3D structure

PDB

1vev Novel conformational states of peptide deformylase from pathogenic bacterium Leptospira interrogans: implications for population shift

Chain

Resolution

2.51 Å

3D
structure

Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Catalytic site (original residue number in PDB)	G48 Q53 C101 L102 H143 E144 H147
Catalytic site (residue number reindexed from 1)	G48 Q53 C101 L102 H143 E144 H147
Enzyme Commision number	3.5.1.88: peptide deformylase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ZN	A	H143 H147	H143 H147

Gene Ontology

	Molecular Function
GO:0016787	hydrolase activity
GO:0042586	peptide deformylase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation
GO:0043686	co-translational protein modification

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:1vev, PDBe:1vev, PDBj:1vev
PDBsum	1vev
PubMed	16239225
UniProt	Q93LE9\|DEF_LEPIN Peptide deformylase (Gene Name=def)

[Back to BioLiP]

zhanglab

zhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417