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BioLiP

Structure of PDB 1dgl Chain A

Receptor sequence
>1dglA (length=237) Species: 3837 (Macropsychanthus grandiflorus) [Search protein sequence]
ADTIVAVELNSYPNTDIGDPNYPHIGIDIKSIRSKSTARWNMQTGKVGTV
HISYNSVAKRLSAVVSYSGSSSTTVSYDVDLNNVLPEWVRVGLSATTGLY
KETNTILSWSFTSKLKTNSIADANSLHFSFHQFSQNPKDLILQGDAFTDS
DGNLELTKVSSSGDPQGNSVGRALFYAPVHIWEKSAVVASFDATFTFLIK
SPDREPADGITFFIANTDTSIPSGSGGRLLGLFPDAN
3D structure
PDB1dgl Crystal structure of the lectin from Dioclea grandiflora complexed with core trimannoside of asparagine-linked carbohydrates.
ChainA
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 MAN A Y12 P13 N14 T15 D16 Y12 P13 N14 T15 D16
BS02 MAN A Y12 G98 L99 A207 D208 R228 Y12 G98 L99 A207 D208 R228
BS03 CA A N10 Y12 N14 D19 N10 Y12 N14 D19
BS04 MN A E8 N10 D19 H24 E8 N10 D19 H24
Gene Ontology
Molecular Function
GO:0005537 D-mannose binding
GO:0030246 carbohydrate binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0090729 toxin activity
Biological Process
GO:0008150 biological_process
GO:0035821 modulation of process of another organism
Cellular Component
GO:0005575 cellular_component

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1dgl, PDBe:1dgl, PDBj:1dgl
PDBsum1dgl
PubMed9830028
UniProtP08902|LECA_DIOGR Lectin alpha chain

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