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Structure of PDB 7o0x Chain M Binding Site BS10

Receptor Information >7o0x Chain M (length=335) Species: 1379270 (Gemmatimonas phototrophica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] EYQNLFTRVQVRTVPEPGIPIDESTGTRYGTGTFSYLAGKFGDAQIGPIY LGWAGVLSLIFGFIAIEIIGLNMWASVGWDPVEFIRQLPWLALEPPPPQY GLRVPPLNQGGWYLMAGFFLTVSIILWWIRIYRRARALQMGSHLPWAFAS AIFLYSTFFFQPLLVGSWSEMVPFGIFPHLDWTSAFSIRYGNLYYNPFHA LSIAFLYGSAVLFAMHGATILAVARMGGEREIEQITDRGTAAERSMLFWR WCMGFNATMESIHRWAWWFAVLTTFTGGIGILLTGTVVDNWYLWGVKHGL VAPYPAQNQLTPEQQDLLRGRYQGTAPDSFPSYVV

Ligand information Ligand ID 0V9 InChI InChI=1S/C37H72NO8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-36(39)43-33-35(34-45-47(41,42)44-32-31-38)46-37(40)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h14,16,35H,3-13,15,17-34,38H2,1-2H3,(H,41,42)/b16-14-/t35-/m1/s1 InChIKey CZOSTDZGCCEZTJ-WMHOIYFHSA-N SMILES Software SMILES ACDLabs 12.01 O=C(OCC(OC(=O)CCCCCCC\C=C/CCCCCC)COP(=O)(OCCN)O)CCCCCCCCCCCCCCC OpenEye OEToolkits 1.7.6 CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC(=O)CCCCCCC/C=C\CCCCCC CACTVS 3.370 CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OCCN)OC(=O)CCCCCCC\C=C/CCCCCC CACTVS 3.370 CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCCCCCC=CCCCCCC OpenEye OEToolkits 1.7.6 CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCCCCCC=CCCCCCC Formula C37 H72 N O8 P Name (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate ChEMBL DrugBank ZINC ZINC000032793830 PDB chain 7o0x Chain aj Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 7o0x 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem. Resolution 2.44 Å Binding residue (original residue number in PDB) F161 F162 Binding residue (residue number reindexed from 1) F159 F160 Annotation score 1

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue May 20 23:05:33 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP/pdb.cgi in <module>()

1701     title=pdb2title(pdbid)

1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704     else:

1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7o0x', asym_id = 'M', bs = 'BS10', title = '2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.'

/var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7o0x', asym_id='M', bs='BS10', title='2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.')

1326         display_ec(ec,csaOrig,csaRenu)

1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

1329     return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0009772,0019684,0030077,0045156', uniprot = '', pdbid = '7o0x', asym_id = 'M'

/var/www/html/BioLiP/pdb.cgi in display_go(go='0009772,0019684,0030077,0045156', uniprot='', pdbid='7o0x', asym_id='M')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>