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Structure of PDB 4bqi Chain B Binding Site BS03

Receptor Information >4bqi Chain B (length=824) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] KISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAESLRD RLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADA LRTLGYELEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRY RHGLFKQIITKKGQEEIPEDWLEKFSPWEIVRHDVVFPVRFFGKVQVNPD GSRKWVDGDVVQALAYDVPIPGYGTKNTISLRLWEAKARAEDLDLFQFNE GEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQFFLCSASLQDIIS RFHERSTTRKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDDNGLGWDEAW DVTSKTVAYTNHTVLPEALEKWSQSLMWKLLPRHMEIIEEIDKRFVQTIR DTRVDLEDKISSLSILDNNPQKPVVRMANLCVVSSHTVNGVAQLHSDILK AELFADYVSIWPNKFQNKTNGITPRRWLRFCSPELSDIITKWLKTDKWIT DLDLLTGLRQFADNEELQSEWASAKTANKKRLAQYIERVTGVSIDPTSLF DIQVKRIHEYKRQLMNILGVVYRFKKLKEMKPEERKKTVPRTVMIGGKAF ATYTNAKRIVKLVNDVGDVVNSDPEVNEYLKVVFVPNYNVTVAEMLIPGS ELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEVGEENFFL FGATADQVPRLRKEREDGLFKPDPRFEEAKQFVKSGVFGSYDYGPLLDSL EGNTGFGRGDYFLVGYDFPSYMDAQAKVDEAYKDRKGWLKMSILSTAGSG KFSSDRTIAQYAKEIWNIEACPVP

Ligand information Ligand ID PLP InChI InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14) InChIKey NGVDGCNFYWLIFO-UHFFFAOYSA-N SMILES Software SMILES CACTVS 3.341 Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O OpenEye OEToolkits 1.5.0 Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O ACDLabs 10.04 O=P(O)(O)OCc1cnc(c(O)c1C=O)C Formula C8 H10 N O6 P Name PYRIDOXAL-5'-PHOSPHATE; VITAMIN B6 Phosphate ChEMBL CHEMBL82202 DrugBank DB00114 ZINC ZINC000001532514 PDB chain 4bqi Chain B Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 4bqi Sugar-Coated Sensor Chip and Nanoparticle Surfaces for the in Vitro Enzymatic Synthesis of Starch-Like Materials Resolution 1.9 Å Binding residue (original residue number in PDB) L93 W494 Y655 N656 V657 G682 S684 K687 Binding residue (residue number reindexed from 1) L79 W477 Y638 N639 V640 G665 S667 K670 Annotation score 1

Enzymatic activity Catalytic site (original residue number in PDB) H379 K572 R573 K578 T683 K687 Catalytic site (residue number reindexed from 1) H362 K555 R556 K561 T666 K670 Enzyme Commision number 2.4.1.1: glycogen phosphorylase.

Gene Ontology Molecular Function GO:0004645 1,4-alpha-oligoglucan phosphorylase activity GO:0008184 glycogen phosphorylase activity GO:0016757 glycosyltransferase activity GO:0030170 pyridoxal phosphate binding

	Biological Process
GO:0005975	carbohydrate metabolic process
GO:0009414	response to water deprivation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0009507	chloroplast

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