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BioLiP

Structure of PDB 1c0i Chain A Binding Site BS03

Receptor Information
>1c0i Chain A (length=363) Species: 5286 (Rhodotorula toruloides) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFAS
PWAGANWTPFMTLTDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQ
NEDGLLGHWYKDITPNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLAR
ELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIR
GQTVLVKSPCKRCTMDSSDPASPAYIIPRPGGEVICGGTYGVGDWDLSVN
PETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPARRGGPRVEAER
IVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDV
AQLVDEAFQRYHG
Ligand information
Ligand IDBE2
InChIInChI=1S/C7H7NO2/c8-6-4-2-1-3-5(6)7(9)10/h1-4H,8H2,(H,9,10)
InChIKeyRWZYAGGXGHYGMB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Nc1ccccc1C(O)=O
ACDLabs 10.04O=C(O)c1ccccc1N
OpenEye OEToolkits 1.5.0c1ccc(c(c1)C(=O)O)N
FormulaC7 H7 N O2
Name2-AMINOBENZOIC ACID
ChEMBLCHEMBL14173
DrugBankDB04166
ZINCZINC000000047985
PDB chain1c0i Chain A Residue 1365 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1c0i Yeast d-amino Acid oxidase: structural basis of its catalytic properties
Resolution1.9 Å
Binding residue
(original residue number in PDB)		F1058 Y1238
Binding residue
(residue number reindexed from 1)		F60 Y240
Annotation score1
Binding affinityMOAD: Kd=2mM
Enzymatic activity
Catalytic site (original residue number in PDB) N1054 S1335 Q1339
Catalytic site (residue number reindexed from 1) N56 S337 Q341
Enzyme Commision number 1.4.3.3: D-amino-acid oxidase.
Gene Ontology
Molecular Function
GO:0003884 D-amino-acid oxidase activity
GO:0071949 FAD binding
Biological Process
GO:0046416 D-amino acid metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:1c0i, PDBe:1c0i, PDBj:1c0i
PDBsum1c0i
PubMed12445787
UniProtP80324|OXDA_RHOTO D-amino-acid oxidase (Gene Name=DAO1)

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