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BioLiP

Structure of PDB 9gd2 Chain W Binding Site BS02

Receptor Information
>9gd2 Chain W (length=641) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIDIVINHRLLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLD
NYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDS
QRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN
SKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSK
GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT
FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPKTMKFNVLLTTYEYILKD
RAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN
IKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL
KKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGFSLLNIMN
ELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQL
LTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRIS
IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMA
RAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII
Ligand information
>9gd2 Chain J (length=237) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tatatctgacacgtgcctggagactagggagtaatccccttggcggttaa
aacgcgggggacagcgcgtacgtgcgtttaagcggtgctagagctgtcta
cgaccaattgaggaattccctggagactagggagtaatccccttggcggt
taaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctagagctgt
ctacgaccaattgagcggcctcggcaccgggattctc
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9gd2 Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT.
Resolution4.2 Å
Binding residue
(original residue number in PDB)		R241 N244 R517 K519 S523 S524 W793 R832
Binding residue
(residue number reindexed from 1)		R48 N51 R319 K321 S325 S326 W590 R629
External links
PDB RCSB:9gd2, PDBe:9gd2, PDBj:9gd2
PDBsum9gd2
PubMed39270644
UniProtP32657|CHD1_YEAST Chromo domain-containing protein 1 (Gene Name=CHD1)

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