Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

Structure of PDB 9d93 Chain Ob Binding Site BS02

Receptor Information
>9d93 Chain Ob (length=595) Species: 2902907 (Mycobacterium phage Bxb1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AADMTTLAGHQQLWDTVMKRRQKREDERIAPPLIRLWDGDYKLRGQLVGE
RSHKFEFIENETGTASITISLDHYLAKWIASHKGRARRNVHVSFDKQGAR
WTGRMDHYDIVRTKEGDVYMEVVFKHDYEELKHIYVWANPFLRPEFQFPK
LWVMFGPAKWALLLTLFVNILRLETSLWTLPDNPLDISEWFPFSLNPGNW
RNIVKPFPFLADNSPLTIVFSRFKSFHDTAKNVLADSQLTIVCRRYFHGE
DPHPFAELSGELGLPLIEGIASLIPLRHGCLVWDIVDNSGWGSETAFGGS
LLTGLVRAVMNIASDGMTEGIDIYTGLPTYPGEYYTPGFLGTYPKAPHVV
FMESPYTGIESSKFTYTEATDTSFVLGGQSMPGVNEVISAGINMGGDFLT
SLINSQLATLGAFGGAIDLPPLGGIMDAVARPLYENVVLAFMEIPTLRAA
GLSLPIAGLEDIVTGLGDFHYNEGWVDGADKAFTISAIMAARAKQWATRA
KHSHEIQVSDAAPYIIGERGHGHFWLGDRVGTTVLGYPDPYTIFVERVTK
LTYEWTSDGPKGWTITIGYKEPEDPILKAFELIQYINSNLGQLGI
Ligand information
>9d93 Chain Nc (length=22) Species: 2902907 (Mycobacterium phage Bxb1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
VDDAIAVKNNEVNKQALTYTRR
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9d93 Structure and infection dynamics of mycobacteriophage Bxb1
Resolution2.85 Å
Binding residue
(original residue number in PDB)
E65 T66 T68 E125 V127 K129 E133 K136 H137 D578 I580 L581 F584 E585 Q588
Binding residue
(residue number reindexed from 1)
E61 T62 T64 E121 V123 K125 E129 K132 H133 D574 I576 L577 F580 E581 Q584
External links

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417