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Structure of PDB 2amf Chain D Binding Site BS02

Receptor Information >2amf Chain D (length=258) Species: 160490 (Streptococcus pyogenes M1 GAS) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYA MSHQDLIDQVDLVILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATF VGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTF DISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTV LASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDK TIDKAKSL

Ligand information Ligand ID PRO InChI InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1 InChIKey ONIBWKKTOPOVIA-BYPYZUCNSA-N SMILES Software SMILES OpenEye OEToolkits 1.5.0 C1C[C@H](NC1)C(=O)O CACTVS 3.341 OC(=O)[C@@H]1CCCN1 CACTVS 3.341 OC(=O)[CH]1CCCN1 OpenEye OEToolkits 1.5.0 C1CC(NC1)C(=O)O ACDLabs 10.04 O=C(O)C1NCCC1 Formula C5 H9 N O2 Name PROLINE ChEMBL CHEMBL54922 DrugBank DB00172 ZINC ZINC000000895360 PDB chain 2amf Chain D Residue 4330 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 2amf Crystal Structures of Delta(1)-Pyrroline-5-carboxylate Reductase from Human Pathogens Neisseria meningitides and Streptococcus pyogenes Resolution 2.2 Å Binding residue (original residue number in PDB) I219 S221 G224 T225 T226 Binding residue (residue number reindexed from 1) I221 S223 G226 T227 T228 Annotation score 5

Enzymatic activity Enzyme Commision number 1.5.1.2: pyrroline-5-carboxylate reductase.

Gene Ontology Molecular Function GO:0000166 nucleotide binding GO:0004735 pyrroline-5-carboxylate reductase activity GO:0016491 oxidoreductase activity

	Biological Process
GO:0006561	proline biosynthetic process
GO:0055129	L-proline biosynthetic process

	Cellular Component
GO:0005737	cytoplasm

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