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Structure of PDB 1w1t Chain A Binding Site BS02

Receptor Information
>1w1t Chain A (length=496) Species: 615 (Serratia marcescens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFL
DINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND
LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVD
GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQI
VAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSW
EELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG
NGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGN
YGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMF
WHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMT
APAYVPGTTYAQGALVSYQGYVWQTKWGYITSAPGSDSAWLKVGRV
Ligand information
Ligand IDCHQ
InChIInChI=1S/C11H14N4O2/c16-10-9-2-1-3-15(9)11(17)8(14-10)4-7-5-12-6-13-7/h5-6,8-9H,1-4H2,(H,12,13)(H,14,16)/t8-,9-/m0/s1
InChIKeyNAKUGCPAQTUSBE-IUCAKERBSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O=C1N[CH](Cc2[nH]cnc2)C(=O)N3CCC[CH]13
OpenEye OEToolkits 1.5.0c1c([nH]cn1)C[C@H]2C(=O)N3CCC[C@H]3C(=O)N2
CACTVS 3.341O=C1N[C@@H](Cc2[nH]cnc2)C(=O)N3CCC[C@@H]13
ACDLabs 10.04O=C1N3CCCC3C(=O)NC1Cc2cncn2
OpenEye OEToolkits 1.5.0c1c([nH]cn1)CC2C(=O)N3CCCC3C(=O)N2
FormulaC11 H14 N4 O2
NameCYCLO-(L-HISTIDINE-L-PROLINE) INHIBITOR;
(3S,8AR)-3-(1H-IMIDAZOL-5-YLMETHYL)HEXAHYDROPYRROLO[1,2-A]PYRAZINE-1,4-DIONE
ChEMBLCHEMBL188225
DrugBankDB02414
ZINCZINC000004899569
PDB chain1w1t Chain A Residue 1514 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1w1t Structure-Based Exploration of Cyclic Dipeptide Chitinase Inhibitors
Resolution1.9 Å
Binding residue
(original residue number in PDB)
W97 W220
Binding residue
(residue number reindexed from 1)
W95 W218
Annotation score1
Binding affinityMOAD: ic50=1.1mM
PDBbind-CN: -logKd/Ki=2.96,IC50=1.1mM
Enzymatic activity
Catalytic site (original residue number in PDB) D140 D142 E144 Y214
Catalytic site (residue number reindexed from 1) D138 D140 E142 Y212
Enzyme Commision number 3.2.1.14: chitinase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 chitinase activity
GO:0008061 chitin binding
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006032 chitin catabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Cellular Component
External links

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