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Structure of PDB 8wi9 Chain r Binding Site BS01

Receptor Information >8wi9 Chain r (length=94) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] QKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKII RTTKKVKAHDENGEAGIGDRVSLMETRPLSATKRWRLVEILEKA

Ligand information >8wi9 Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uggagaguuugauccuggcucaggacgaacgcuggcggcgugcuuaacac augcaagucgaacggaaaggcccuuucggggguacucgaguggcgaacgg gugaguaacacgugggugaucugcccugcacuuugggauaagccugggaa acugggucuaauaccgaauacacccugcuggucgcauggccugguagggg aaagcuuuugcggugugggaugggcccgcggccuaucagcuuguuggugg ggugauggccuaccaaggcgacgacggguagccggccugagagggugacc ggccacacugggacugagauacggcccagacuccuacgggaggcagcagu ggggaauauugcacaaugggcgcaagccugaugcagcgacgccgcgugag ggaugacggccuucggguuguaaaccucuuucagcacagacgaagcgcaa gugacgguaugugcagaagaaggaccggccaacuacgugccagcagccgc gguaauacguaggguccgagcguuguccggaauuacugggcguaaagagc ucguaggugguuugucgcguuguucgugaaaacucacagcuuaacugugg gcgugcgggcgauacgggcagacuagaguacugcaggggagacuggaauu ccugguguagcgguggaaugcgcagauaucaggaggaacaccgguggcga aggcgggucucugggcaguaacugacgcugaggagcgaaagcguggggag cgaacaggauuagauacccugguaguccacgccguaaacgguggguacua gguguggguuuccuuccuugggauccgugccguagcuaacgcauuaagua ccccgccuggggaguacggccgcaaggcuaaaacucaaaggaauugacgg gggcccgcacaagcggcggagcauguggauuaauucgaugcaacgcgaag aaccuuaccuggguuugacaugcacaggacgccggcagagaugucgguuc ccuuguggccugugugcagguggugcauggcugucgucagcucgugucgu gagauguuggguuaagucccgcaacgagcgcaacccuugucucauguugc cagcacguuaugguggggacucgugagagacugccggggucaacucggag gaagguggggaugacgucaagucaucaugccccuuauguccagggcuuca cacaugcuacaauggccgguacaaagggcugcgaugccgugagguggagc gaauccuuucaaagccggucucaguucggaucggggucugcaacucgacc ccgugaagucggagucgcuaguaaucgcagaucagcaacgcugcggugaa uacguucccgggccuuguacacaccgcccgucacgucaugaaagucggua acacccgaagccgguggccuaacccuuguggagggagccgucgaaggugg gaucggcgauugggacgaagucguaacaagguagccguaccggaaggugc ggcuggaucaccucc ....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<< .<<<..<<<..<<.<..<<<<<<<....>>>>>.>>>..>>>>>...... <<........<<<<<<<..<<...<<<<<<<<<<<<.....<<<<<<... .>>>>>>......>>>>.....<<<<<<<<<<<<..>>>>>.>>>>>>>. ...<<....>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<< <.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...> >>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>> >.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<< <......<<<<....>>>>.....>>>>...<.<<<<<......<<.... >>.......>>>>>....>..<<<<<(((...<<<<<.....<<.)))>> .......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<< <<...<<<.<<<<<<<.<<<<<<<<<<.....<<<<<<<.....>>>>>> >...>>>>>>>..>>>>>>>>>>...<<<<<<<<...<<<<<<<....<< <<<<<<<..<<<......>>>.....>>>>>>>>>...........<<.. ..>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<...< <...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<.. <<<<<<<<<<<<.......>>>>>>>>>>>>...<<..))>>.....>>> >>>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<. <<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>... .......<<<<<<<......<<<<<<<...<<<<<<<....>>>>>>>.< <.....>>.>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<.. ..>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<....< <..<<<......>>>>>.....>>>>>>.....<<<<<.....>>>>>.. ......>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>. >>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>> ....>>>......>>>>>>>......<....<<<<<<<........>>>> >>>....>.....>>>>>>....<<<<<<<..........>>>>>>>... ...>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<. .<<<<....<.<<<<..<<<..<<.....>>.>>>.>>>>.>...>>>>. .>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>> >>>>...........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8wi9 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Resolution 3.5 Å Binding residue (original residue number in PDB) K5 G6 P7 K8 Y9 T10 A12 R17 G18 R20 S29 K31 M32 Q33 K34 L48 K51 T56 M77 T79 R80 P81 L82 S83 A84 T85 K86 R87 R89 Binding residue (residue number reindexed from 1) K2 G3 P4 K5 Y6 T7 A9 R14 G15 R17 S26 K28 M29 Q30 K31 L45 K48 T53 M74 T76 R77 P78 L79 S80 A81 T82 K83 R84 R86

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

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View graph for Cellular Component