Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

Structure of PDB 8cah Chain f Binding Site BS01

Receptor Information >8cah Chain f (length=81) Species: 580240 (Saccharomyces cerevisiae W303) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] VLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQ TAVTCESCSTILCTPTGGKAKLSEGTSFRRK

Ligand information >8cah Chain 2 (length=1745) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca uuaaaucaguuaucguuuauuugauaguuacaugguauaacugugguaau ucuagagcuaauacaugcuuaaaaucucgacccuuuggaagagauguauu uauuagauaaaaaaucaaugucuucggacucuuugaugauucauaauaac uuuucgaaucgcauggccuugugcuggcgaugguucauucaaauuucugc ccuaucaacuuucgaugguaggauaguggccuaccaugguuucaacgggu aacggggaauaaggguucgauuccggagagggagccugagaaacggcuac cacauccaaggaaggcagcaggcgcgcaaauuacccaauccuaauucagg gagguagugacaauaaauaacgauacagggcccauucgggucuuguaauu ggaaugaguacaauguaaauaccuuaacgaggaacaauuggagggcaagu cuggugccagcagccgcgguaauuccagcuccaauagcguauauuaaagu uguugcaguuaaaaagcucguaguugaacuuugggcccgguuggccgguc ggauuuccaacggggccuuuccuucuggcuaaccuugagcuuggcgaacc aggacuuuuacuuugaaaaaauuagaguguucaaagcaggcguauugcuc gaauauauuagcauggaauaauagaauaggacguuugguucuauuuuguu gguuucuaggaccaucguaaugauuaauagggacggucgggggcaucagu auucaauugucagaggugaaauucuuggauuuauugaagacuaacuacug cgaaagcauuugccaaggacguuuucauuaaucaagaacgaaaguuaggg gaucgaagaugaucagauaccgucguagucuuaaccauaaacuaugccga cuagggaucgggugguguuuuuuuaaugacccacucggcaccuuacgaga aaucaaagucuuuggguucuggggggaguauggucgcaaggcugaaacuu aaaggaauugacggaagggcaccaccaggaguggagccugcggcuuaauu ugacucaacacggggaaacucaccagguccagacacaauaaggauugaca gauugagagcucuuucuugauuuugugggugguggugcauggccguucuu aguugguggagugauuugucugcuuaauugcgauaacgaacgagaccuua accuacuaaauaguggugcuagcauuugcugguuauccacuucuuagagg gacuaucgguuucaagccgauggaaguuugaggcaauaacaggucuguga ugcccuuagacguucugggccgcacgcgcgcuacacugacggagccagcg agucuaaccuuggccgagaggucuugguaaucuugugaaacuccgucgug cuggggauagagcauuguaauuauugcucuucaacgaggaauuccuagua agcgcaagucaucagcuugcguugauuacgucccugcccuuuguacacac cgcccgucgcuaguaccgauugaauggcuuagugaggccucaggaucugc uuagaucagagcggagaauuuggacaaacuuggucauuuagaggaacuaa aagucguaacaagguuuccguaggugaaccugcggaaggaucauu ...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<...<......<<< .<<<..<<....<<....<<..........>>...>>.>>......<<.. ......<<<..<<..<<....<<<..........<.....<<.<<<.... .>>>.>>......>.........<<<<<..<<....>>..>>>>><...< <<<<<......(((.{((.........................>>>>>>. ....>...<<<<..<<<.....>>>.>>>>....>>>...>>>>..>>>. <<<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>. ..<<<.<<<<....>>>>....>>>.>>.<<.<<<..........>>>.> >.<.<<....>>.>...>>>>>>.........<<<....<<<.....>>> ..>>>..>....>.>.....<<<<<<<...<<......>>...>>>>.>> >......<<..<...........>..>>.........<<<<<((...... <<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>>.... .....<<<[[.....<.<<...<<<.<<....<<<<<<.<<<<<...... ....>..>>>>.>>>>>>.....<<<<<....................>> >>>....<<<<<.<<.......<<...<.......>..<<<.....>>>. ...>>......>>.>>..>>>.........<<<..<<<<<<<<.....)) .}))).>>>>>>>>.>>>.....>>....<<<<<<.<<...<<<<..<<. .<<<<<<.<...<<<......>>>......>.>>>>>>..>>.......< <....>>...>>>>...>>>>>.>>>...>>>...>>.>....<<<<<<< ...<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<.< <.<<<..<<<<<<<<.<<<........>>>>>>>>>>>..>>>...<<.. ]]>>...>>.....>>>.>>>.<<<......<<<<....>>>>....>>> ..)))).}<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<<...... <<........>>..........<<<<<.<....<<<<<........<<.< <<........>>>.>>......>>>>>...<<.<<<..<<.<<<<<<... .<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<<<<< .<<..<<<<..<<<<<.<<<<<<....>>>>>>...>>>>>..>>>>.>> ....<<<<<<.....>>>>>>.......>>>>>....>>>.>>>.....> >>>>>>.....>.>>>>>...>>.>>>>.>>>.....<<<<<<<...... <<.....<<..<<<<....>>>>..>>....>>.......>>>>>>>... ...<....<<<<<<..........>>>>>>....>.....>>>>>>.... <<<<<<<<.......>>>>>>>>......>>...>>>>>>>>>>.>>... .<..<<.<..<<<<.<<....<<<<<<<<.<<<..<.<<..<...<<<<< <<.<..>.>>>>>>>...>..>>.>..>>>.>>>>>>>>...>>.>>>>. ..>.>>...>.....<<<<<<<<<<..>>>>>>>>>>........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8cah Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Resolution 3.0 Å Binding residue (original residue number in PDB) R17 H19 K20 L21 K22 P28 S30 H49 Q51 P66 T67 G68 G69 K70 K72 Binding residue (residue number reindexed from 1) R16 H18 K19 L20 K21 P27 S29 H48 Q50 P65 T66 G67 G68 K69 K71

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0008270 zinc ion binding GO:0046872 metal ion binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component