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Structure of PDB 8wkp Chain S28E Binding Site BS01

Receptor Information >8wkp Chain S28E (length=63) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] GFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDIL ILRETEREARKLS

Ligand information >8wkp Chain A16S (length=1325) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] auuccgguugauccugccggacccgaccgcuaucgggguagggauaagcc augggagucuuacacucccggguaagggaguguggcggacggcugaguaa cacguggcuaaccuacccucgggacggggauaaccccgggaaacugggga uaauccccgauagggaaggaguccuggaaugguuccuucccuaaagggcu auaggcuauuucccguuuguagcgcccgaggauggggcuacggcccauca ggcugucggugggguaaaggcccaccgaaccuauaacggguaggggccgu ggaagcgggagccuccaguugggcacugagacaagggcccaggcccuacg gggcgcaccaggcgcgaaacguccccaaugcgcgaaagcgugagggcgcu accccgagugccuccgcaggaggcuuuuccccgcucuaaaaaggcggggg aauaagcggggggcaagucuggugucagccgccgcgguaauaccagcucc gcgaguggucggggugauuacugggccuaaagcgccuguagccggcccac caagucgccccuuaaaguccccggcucaaccggggaacugggggcgauac uggugggcuagggggcgggagaggcgggggguacucccggaguaggggcg aaauccuuagauaccgggaggaccaccaguggcggaagcgccccgcuaga acgcgcccgacggugagaggcgaaagccgggggucccggcuguaaacgau gcgggcuaggugucgaguaggcuuagagccuacucggugccgcagggaag ccguuaagcccgccgccuggggaguacggucgcaagacugaaacuuaaag gaauuggcgggggagcaccacaagggguggaaccugcggcucaauuggag ucaacgccuggaaucuuaccggggagaccgcaguaugacggccaggcuaa cgaccuugccugacucgcggagaggaggugcauggccgucgccagcucgu guugugaaauguccgguuaaguccggcaacgagcgagacccccaccccua guugguauucuggacuccgguccagaaccacacuagggggacugccggcg uaagccggaggaaggagggggccacggcaggucagcaugccccgaaaccg ggccgcacgcggguuacaauggcagggacaacgggaugcuaccucgaaag ggggagccaauccuuaaacccugccgcaguugggaucgagggcugaaacc cgcccucgugaacgaggaaucccuaguaaccgcgggucaacaacccgcgg ugaauacgucccugcuccuugcaca ...<<<<<.[.((((>>>>>.<<<<<<<<......<<<.<<......<<< .<<<...<...<<<<<<<<......>>>>>>>>.>......<<<...... ..<<<<<<<..<<...<<<<<<<.<<<<.....<<<<........>>>>. .....>>>>...<<<<<<.<<.<<......>>>>.>>>>>>........< <<................>>>...>>>>>>>..>>>>>>>>>.<<<.... <<....<<<<<<<.......>>>>>>>..>>......>>>..<<<<<<<< ....>>>>...>>>>.>>><<<<<............>>>>>.<<<<.... >>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>> ..>>>....<<<<<.....>>>>>...<<<<<<<.........>>>>>>> .....<<<<<((......<<<<.....<<..))>>.......>>>>.>>> >>...>>>>>>>>..........<<<((.....<<<<...<<<.<<<<<< <.<<<<<<<<<......<<<<<<<.....>>>>>>>....>>>>>>>..> >>>>>>>>...<<<<<<.....<<<<<<<<<<.<<<<<<<....<<.... ....>>.......>>>>>>>.>>>.......<<....>>.>>>>>>>... .>>>.>>>...>>>...>>>>...<<<<<<.....>>>>>>......... <<<<<<..<<<.<<<<<<.<<<.....>>>.>>>>>>.>>>...<<..)) >>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)) )).].<.....<<<<<...<<.<<<<<..<<.<<<<<<<.......<<.. ......>>..........<<<...................<<.<<<.... ...>>>.>>..............<<.<<....<<<<<.......<<<<<< ............<<<<......>>>>..>>>>>>....<<<...<<<<<< <..........<<<<....>>>>.........>>>>>>>.....<<<<<. ...>>>>>.........>>>.........>>>...>>..>>>>.....>> >....>.>>>>>>>>.....<<<.<<<.......<..<...<<<<....> >>>...>....>......>>>.>>>...........<<<<<<<....... .>>>>>>>...........>>>>>....<<<<<<<<.......>>>>>>> >......>>....>>>>>...>...

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8wkp Structural basis of translation inhibition by a valine tRNA-derived fragment Resolution 4.62 Å Binding residue (original residue number in PDB) V33 T34 G60 P61 R63 Binding residue (residue number reindexed from 1) V15 T16 G42 P43 R45

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome

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