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Structure of PDB 8wkp Chain S27E Binding Site BS01

Receptor Information >8wkp Chain S27E (length=59) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MKAKFKILIPEPKSKFIRVKCRQCNNEQVIFSNATFPVRCLSCGAQIVIP KGGKAKIEG

Ligand information >8wkp Chain A16S (length=1325) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] auuccgguugauccugccggacccgaccgcuaucgggguagggauaagcc augggagucuuacacucccggguaagggaguguggcggacggcugaguaa cacguggcuaaccuacccucgggacggggauaaccccgggaaacugggga uaauccccgauagggaaggaguccuggaaugguuccuucccuaaagggcu auaggcuauuucccguuuguagcgcccgaggauggggcuacggcccauca ggcugucggugggguaaaggcccaccgaaccuauaacggguaggggccgu ggaagcgggagccuccaguugggcacugagacaagggcccaggcccuacg gggcgcaccaggcgcgaaacguccccaaugcgcgaaagcgugagggcgcu accccgagugccuccgcaggaggcuuuuccccgcucuaaaaaggcggggg aauaagcggggggcaagucuggugucagccgccgcgguaauaccagcucc gcgaguggucggggugauuacugggccuaaagcgccuguagccggcccac caagucgccccuuaaaguccccggcucaaccggggaacugggggcgauac uggugggcuagggggcgggagaggcgggggguacucccggaguaggggcg aaauccuuagauaccgggaggaccaccaguggcggaagcgccccgcuaga acgcgcccgacggugagaggcgaaagccgggggucccggcuguaaacgau gcgggcuaggugucgaguaggcuuagagccuacucggugccgcagggaag ccguuaagcccgccgccuggggaguacggucgcaagacugaaacuuaaag gaauuggcgggggagcaccacaagggguggaaccugcggcucaauuggag ucaacgccuggaaucuuaccggggagaccgcaguaugacggccaggcuaa cgaccuugccugacucgcggagaggaggugcauggccgucgccagcucgu guugugaaauguccgguuaaguccggcaacgagcgagacccccaccccua guugguauucuggacuccgguccagaaccacacuagggggacugccggcg uaagccggaggaaggagggggccacggcaggucagcaugccccgaaaccg ggccgcacgcggguuacaauggcagggacaacgggaugcuaccucgaaag ggggagccaauccuuaaacccugccgcaguugggaucgagggcugaaacc cgcccucgugaacgaggaaucccuaguaaccgcgggucaacaacccgcgg ugaauacgucccugcuccuugcaca ...<<<<<.[.((((>>>>>.<<<<<<<<......<<<.<<......<<< .<<<...<...<<<<<<<<......>>>>>>>>.>......<<<...... ..<<<<<<<..<<...<<<<<<<.<<<<.....<<<<........>>>>. .....>>>>...<<<<<<.<<.<<......>>>>.>>>>>>........< <<................>>>...>>>>>>>..>>>>>>>>>.<<<.... <<....<<<<<<<.......>>>>>>>..>>......>>>..<<<<<<<< ....>>>>...>>>>.>>><<<<<............>>>>>.<<<<.... >>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>> ..>>>....<<<<<.....>>>>>...<<<<<<<.........>>>>>>> .....<<<<<((......<<<<.....<<..))>>.......>>>>.>>> >>...>>>>>>>>..........<<<((.....<<<<...<<<.<<<<<< <.<<<<<<<<<......<<<<<<<.....>>>>>>>....>>>>>>>..> >>>>>>>>...<<<<<<.....<<<<<<<<<<.<<<<<<<....<<.... ....>>.......>>>>>>>.>>>.......<<....>>.>>>>>>>... .>>>.>>>...>>>...>>>>...<<<<<<.....>>>>>>......... <<<<<<..<<<.<<<<<<.<<<.....>>>.>>>>>>.>>>...<<..)) >>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)) )).].<.....<<<<<...<<.<<<<<..<<.<<<<<<<.......<<.. ......>>..........<<<...................<<.<<<.... ...>>>.>>..............<<.<<....<<<<<.......<<<<<< ............<<<<......>>>>..>>>>>>....<<<...<<<<<< <..........<<<<....>>>>.........>>>>>>>.....<<<<<. ...>>>>>.........>>>.........>>>...>>..>>>>.....>> >....>.>>>>>>>>.....<<<.<<<.......<..<...<<<<....> >>>...>....>......>>>.>>>...........<<<<<<<....... .>>>>>>>...........>>>>>....<<<<<<<<.......>>>>>>> >......>>....>>>>>...>...

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8wkp Structural basis of translation inhibition by a valine tRNA-derived fragment Resolution 4.62 Å Binding residue (original residue number in PDB) M1 K2 K4 F5 K13 N33 F36 P50 K51 G52 G53 Binding residue (residue number reindexed from 1) M1 K2 K4 F5 K13 N33 F36 P50 K51 G52 G53

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome

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