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Structure of PDB 8wkp Chain S17P Binding Site BS01

Receptor Information >8wkp Chain S17P (length=111) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] KKGQLVKNVGIEGVSAPSKTCDDEYCPYHGSLKVRGIVLEGKLIRARANR TGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIA KSISFVILGVK

Ligand information >8wkp Chain A16S (length=1325) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] auuccgguugauccugccggacccgaccgcuaucgggguagggauaagcc augggagucuuacacucccggguaagggaguguggcggacggcugaguaa cacguggcuaaccuacccucgggacggggauaaccccgggaaacugggga uaauccccgauagggaaggaguccuggaaugguuccuucccuaaagggcu auaggcuauuucccguuuguagcgcccgaggauggggcuacggcccauca ggcugucggugggguaaaggcccaccgaaccuauaacggguaggggccgu ggaagcgggagccuccaguugggcacugagacaagggcccaggcccuacg gggcgcaccaggcgcgaaacguccccaaugcgcgaaagcgugagggcgcu accccgagugccuccgcaggaggcuuuuccccgcucuaaaaaggcggggg aauaagcggggggcaagucuggugucagccgccgcgguaauaccagcucc gcgaguggucggggugauuacugggccuaaagcgccuguagccggcccac caagucgccccuuaaaguccccggcucaaccggggaacugggggcgauac uggugggcuagggggcgggagaggcgggggguacucccggaguaggggcg aaauccuuagauaccgggaggaccaccaguggcggaagcgccccgcuaga acgcgcccgacggugagaggcgaaagccgggggucccggcuguaaacgau gcgggcuaggugucgaguaggcuuagagccuacucggugccgcagggaag ccguuaagcccgccgccuggggaguacggucgcaagacugaaacuuaaag gaauuggcgggggagcaccacaagggguggaaccugcggcucaauuggag ucaacgccuggaaucuuaccggggagaccgcaguaugacggccaggcuaa cgaccuugccugacucgcggagaggaggugcauggccgucgccagcucgu guugugaaauguccgguuaaguccggcaacgagcgagacccccaccccua guugguauucuggacuccgguccagaaccacacuagggggacugccggcg uaagccggaggaaggagggggccacggcaggucagcaugccccgaaaccg ggccgcacgcggguuacaauggcagggacaacgggaugcuaccucgaaag ggggagccaauccuuaaacccugccgcaguugggaucgagggcugaaacc cgcccucgugaacgaggaaucccuaguaaccgcgggucaacaacccgcgg ugaauacgucccugcuccuugcaca ...<<<<<.[.((((>>>>>.<<<<<<<<......<<<.<<......<<< .<<<...<...<<<<<<<<......>>>>>>>>.>......<<<...... ..<<<<<<<..<<...<<<<<<<.<<<<.....<<<<........>>>>. .....>>>>...<<<<<<.<<.<<......>>>>.>>>>>>........< <<................>>>...>>>>>>>..>>>>>>>>>.<<<.... <<....<<<<<<<.......>>>>>>>..>>......>>>..<<<<<<<< ....>>>>...>>>>.>>><<<<<............>>>>>.<<<<.... >>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>> ..>>>....<<<<<.....>>>>>...<<<<<<<.........>>>>>>> .....<<<<<((......<<<<.....<<..))>>.......>>>>.>>> >>...>>>>>>>>..........<<<((.....<<<<...<<<.<<<<<< <.<<<<<<<<<......<<<<<<<.....>>>>>>>....>>>>>>>..> >>>>>>>>...<<<<<<.....<<<<<<<<<<.<<<<<<<....<<.... ....>>.......>>>>>>>.>>>.......<<....>>.>>>>>>>... .>>>.>>>...>>>...>>>>...<<<<<<.....>>>>>>......... <<<<<<..<<<.<<<<<<.<<<.....>>>.>>>>>>.>>>...<<..)) >>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)) )).].<.....<<<<<...<<.<<<<<..<<.<<<<<<<.......<<.. ......>>..........<<<...................<<.<<<.... ...>>>.>>..............<<.<<....<<<<<.......<<<<<< ............<<<<......>>>>..>>>>>>....<<<...<<<<<< <..........<<<<....>>>>.........>>>>>>>.....<<<<<. ...>>>>>.........>>>.........>>>...>>..>>>>.....>> >....>.>>>>>>>>.....<<<.<<<.......<..<...<<<<....> >>>...>....>......>>>.>>>...........<<<<<<<....... .>>>>>>>...........>>>>>....<<<<<<<<.......>>>>>>> >......>>....>>>>>...>...

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8wkp Structural basis of translation inhibition by a valine tRNA-derived fragment Resolution 4.62 Å Binding residue (original residue number in PDB) K9 N10 K35 R37 G38 R47 R49 N51 R52 T53 R58 Y60 K66 Y67 K68 R72 R73 R74 R76 H78 H80 R99 P100 I101 K103 S104 Binding residue (residue number reindexed from 1) K7 N8 K33 R35 G36 R45 R47 N49 R50 T51 R56 Y58 K64 Y65 K66 R70 R71 R72 R74 H76 H78 R97 P98 I99 K101 S102

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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