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Structure of PDB 8vs9 Chain S16 Binding Site BS01

Receptor Information >8vs9 Chain S16 (length=82) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGT RLDLDRIAHWVGQGATISDRVAALIKEVNKAA

Ligand information >8vs9 Chain 16S (length=1539) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga guggcggacgggugaguaaugucugggaaacugccugauggagggggaua acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg cccgucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu cgggagggcgcuuaccacuuugugauucaugacuggggugaagucguaac aagguaaccguaggggaaccugcgguuggaucaccuccu .......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..... <<<.<<<..<<<..<<.<<..<<<<<<<..<....>..>>>>.>>>>>.. >>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<.... .<<<<<......>>>>>......>>.>.....<<<....>>>....<<<< <<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<.. <<<<<<<.........>>>>>>>>>>......>>>..<<<<<<<<....> >>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>. ..>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>> >>..<<<<.......<<<....>>>......>>>>...<.<<<<<..... .<.<<<<<<<<.......>>>>>>>>.>........>>>>>....>..<< <<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>> >>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<< <<<<......<<<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>> ...<<<<<<<<...<<<<<<<....<<<<<<<<.<.<<<......>>>.. ...>>>>>>>>>...........<<....>>.>>>>>>>..>>>>.>>>> ...>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>.. .>>>>>>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>>> >>>>>>>..<<..))>>.....>>>>>>.>>>.<<<......<<<<.... >>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<< <<<<......<<........>>..........<<<<<<<......<<<<< <<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<< <..<<<<<<.<.....<<<<<<<<<....>>>..<<<<......>>>>.. >>>>>>.....<<<<.<<<<<<....<<..<<<.....>>>>>.....>> >>>>.....<<<<<.....>>>>>........>>>>.....>...>>>.. .>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.... .<<<..<<...<<<....>>>...>>....>>>.....>>>>>>>..... .<....<<<<<<<........>>>>>>>....>.....>>>>>>....<< <<<<<.........>>>>>>>......>>...>>>>>>>>>>.>>....< ..<<.<.<<<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<.. ..>>.>>>>>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...> .....<<<<<<<<<....>>>>>>>>>............

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon. Resolution 3.9 Å Binding residue (original residue number in PDB) M1 V2 R5 R8 G10 A11 K12 K13 R14 F16 Y17 S24 R25 R28 G30 R31 I33 F38 S44 K46 Q63 G64 S68 R70 E77 Binding residue (residue number reindexed from 1) M1 V2 R5 R8 G10 A11 K12 K13 R14 F16 Y17 S24 R25 R28 G30 R31 I33 F38 S44 K46 Q63 G64 S68 R70 E77

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component