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Structure of PDB 8hma Chain E Binding Site BS01

Receptor Information
>8hma Chain E (length=1253) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRACISIVEWKPFEIIILLTIFANCVALAIYIPFPEDDSNATNSNLERVE
YLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAIFD
VKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIY
AIIGLELFMGKMHKTCYNQEGIADVPAEDDPSPCALETGHGRQCQNGTVC
KPGWDGPKHGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAVGRDWPW
IYFVTLIIIGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEE
DLKGYLDWITQAEDIWNRFCRRKCRAAVKSNVFYWLVIFLVFLNTLTIAS
EHYNQPNWLTEVQDTANKALLALFTAEMLLKMYSLGLQAYFVSLFNRFDC
FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVAS
LLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFP
QSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYI
LLNVFLAIAVDNLADAESLTSAQKEEEEEKERKKLFRLQCHRIVNDTIFT
NLILFFILLSSISLAAEDPVQHTSFRNHILFYFDIVFTTIFTLEIILKMT
AYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQSSAINVVKILRVLRVL
RPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLFKG
KLYTCSDSSKQTEAECKGNYITYKDGEVDHPIIQPRSWENSKFDFDNVLA
AMMALFTVSTFEGWPELLYRSIDSHTEDKGPIYNYRVEISIFFIIYIIII
AFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYI
PKNQHQYKVWYVVNSTYFEYLMFVLILLNTICLAMQHYGQSCLFKIAMNI
LNMLFTGLFTVEMILKLIAFKPKGYFSDPWNVFDFLIVIGSIIDVILSEV
NPAEHTSITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLI
VMLFFIYAVIGMQVFGKIALNDTTEINRNNNFQTFPQAVLLLFRCATGEA
WQDIMLACMPGKKCAPESEPCGSSFAVFYFISFYMLCAFLIINLFVAVIM
DNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQP
CPHRVACKRLVSNATLFALVRTALRIKTEGNLEQANEELRAIIKKLLDQV
VPP
Ligand information
Ligand IDA1AC9
InChIInChI=1S/C38H40N2O6/c1-39-15-13-25-20-32(42-4)34-22-28(25)29(39)17-23-7-10-27(11-8-23)45-33-19-24(9-12-31(33)41-3)18-30-36-26(14-16-40(30)2)21-35(43-5)37(44-6)38(36)46-34/h7-12,14,16,19-22,29-30H,13,15,17-18H2,1-6H3/t29-,30?/m0/s1
InChIKeyOUHWUXGBWHCKDH-UFXYQILXSA-N
SMILES
SoftwareSMILES
CACTVS 3.385COc1ccc2C[C@@H]3N(C)C=Cc4cc(OC)c(OC)c(Oc5cc6[C@H](Cc7ccc(Oc1c2)cc7)N(C)CCc6cc5OC)c34
CACTVS 3.385COc1ccc2C[CH]3N(C)C=Cc4cc(OC)c(OC)c(Oc5cc6[CH](Cc7ccc(Oc1c2)cc7)N(C)CCc6cc5OC)c34
ACDLabs 12.01COc1c(OC)cc2C=CN(C)C3Cc4ccc(OC)c(c4)Oc4ccc(cc4)CC4c5cc(Oc1c32)c(OC)cc5CCN4C
OpenEye OEToolkits 2.0.7CN1CCc2cc(c3cc2C1Cc4ccc(cc4)Oc5cc(ccc5OC)CC6c7c(cc(c(c7O3)OC)OC)C=CN6C)OC
OpenEye OEToolkits 2.0.7CN1CCc2cc(c3cc2[C@@H]1Cc4ccc(cc4)Oc5cc(ccc5OC)CC6c7c(cc(c(c7O3)OC)OC)C=CN6C)OC
FormulaC38 H40 N2 O6
Name6,6',7,12-tetramethoxy-2,2'-dimethyl-1beta-3,4-didehydroberbaman
ChEMBL
DrugBank
ZINC
PDB chain8hma Chain E Residue 2304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8hma Structural bases of inhibitory mechanism of Ca V 1.2 channel inhibitors.
Resolution3.4 Å
Binding residue
(original residue number in PDB)
L401 N741 N1179 A1461 I1516 F1519
Binding residue
(residue number reindexed from 1)
L269 N548 N856 A1096 I1142 F1145
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005245 voltage-gated calcium channel activity
GO:0005262 calcium channel activity
GO:0046872 metal ion binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
Cellular Component
GO:0005891 voltage-gated calcium channel complex
GO:0016020 membrane
GO:0030315 T-tubule
GO:0030425 dendrite
GO:0034702 monoatomic ion channel complex
GO:0042383 sarcolemma
GO:0042995 cell projection
GO:0043204 perikaryon
GO:0045202 synapse
GO:0045211 postsynaptic membrane
GO:0098839 postsynaptic density membrane

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Molecular Function

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Biological Process

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Cellular Component
External links

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