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BioLiP

Structure of PDB 1nkk Chain C Binding Site BS01

Receptor Information
>1nkk Chain C (length=226) Species: 10359 (Human betaherpesvirus 5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QQSQAVAPVYVGGFLARYDQSPDEARLLLPRDVVEHWLHAQVALPLNINH
DDTAVVGHVAAMQSVRDGLFCLGCVTSPRFLEIVRRASEKSELVSRGPVS
PLQPDKVVEFLSGSYAGLSLSSRRCDDVETTPFKHVALCSVGRRRGTLAV
YGRDPEWVTQRFPDLTAADRDGLRAQWQRCGDPFRSDSYGLLGNSVDALY
IRERLPKLRYDKQLVGVTERESYVKA
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1nkk Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
Resolution2.6 Å
Binding residue
(original residue number in PDB)		R1031 H1063 S1132 S1134 S1135 R1136 R1137 G1164 R1165
Binding residue
(residue number reindexed from 1)		R26 H50 S119 S121 S122 R123 R124 G142 R143
Enzymatic activity
Enzyme Commision number 3.4.21.97: assemblin.
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nkk, PDBe:1nkk, PDBj:1nkk
PDBsum1nkk
PubMed12549906
UniProtP16753|SCAF_HCMVA Capsid scaffolding protein (Gene Name=UL80)

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