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BioLiP

Structure of PDB 8onj Chain B Binding Site BS01

Receptor Information
>8onj Chain B (length=269) Species: 81468 (Aminobacterium colombiense) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNLCYIDGKFLPLEEAKLPVTDLIIQRGVGVFETISTHSRRPLMLTPHLK
RLEGSATASSIVMPATLDEMARIIREGIKKMGCETMVLPYITGGDSFGKD
HLFSSSRYFVIFEEIRKPDPILYEKGVALHPINAERYLPSTKSINYMLSF
TGAYEILYCPEGEIVEGSHSTFFLIKNGHLITAPTSRALSGTTRQIVLEL
ARRGNIQVEERCPLLTELPEAEEAFITGTVKELLPVVRIGDQIIGNGVPG
KLTKHLHQVYLSSIVEWLE
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain8onj Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8onj In search for structural targets for engineering d-amino acid transaminase: modulation of pH optimum and substrate specificity.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		R51 R136 K142 E172 S174 H175 S176 L195 T198 T199 G234 T235
Binding residue
(residue number reindexed from 1)		R51 R136 K142 E166 S168 H169 S170 L189 T192 T193 G228 T229
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008483 transaminase activity
Biological Process
GO:0019752 carboxylic acid metabolic process
GO:0046394 carboxylic acid biosynthetic process

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Molecular Function
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Biological Process
External links

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