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BioLiP

Structure of PDB 6sm3 Chain B Binding Site BS01

Receptor Information
>6sm3 Chain B (length=903) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVMTTSGDPTAVASV
EIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFESMSVLKDASATSI
YGARAANGVVFIQTKKGKMSERGRITFNASYGISQILNTKPLDNMMTGDE
LLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSLKDEYGKTLFPVD
FNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIGYFDQEGMAREPA
NFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYFGKYYMGSGTFGV
LTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKMRPFSSESHQANV
NGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYDSTPLGERRERAY
RDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDVIGASSKGFESDK
LMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDKWMYIDFSVRNDQ
SSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRLKMSYGTTGNSEI
GNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQFNFGLAAGAFNN
RLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSMKNTGVDLSLKGT
IYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTGTIWEIGYPNSFY
MAEYAGIDKKTGKQLWYVPGQVDADGNKVTTSQYSADLETRIDKSVTPPI
TGGFSLGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLMQLNKDKML
LNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTYVLPNSLFA
GQNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNSKQYVAGIQ
LSF
Ligand information
>6sm3 Chain C (length=13) Species: 242619 (Porphyromonas gingivalis W83) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GGATTATTTTSTS
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6sm3 Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		Y405 Y406 M407 N800 T801 N894 Y897 F898 F936 N997 V998 K1000
Binding residue
(residue number reindexed from 1)		Y291 Y292 M293 N686 T687 N780 Y783 F784 F822 N883 V884 K886
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links

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