Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

Structure of PDB 8w71 Chain A Binding Site BS01

Receptor Information
>8w71 Chain A (length=494) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMNGCDGDFKTPLGTVETRTMTAVLSPAAATERLISAVSELKSQPPSFSS
GVVRLQVPIDQQIGAIDWLQAQNEIQPRCFFSRRSDVGRPDLLLRNLVSV
AGIGSAVFFRDLDPFSHDDWRSIRRFLSSTSPLIRAYGGMRFDPNGKIAV
EWEPFGAFYFSVPQVEFNEFGGSSMLAATIAWDDELSWTLENAIEALQET
MLQVSSVVMKLRNRSLGVSVLSKNHVPTKGAYFPAVEKALEMINQKSSPL
NRVVLARNSRIITDTDIDPIAWLAQLQREGHDAYQFCLQPPGAPAFIGNT
PERLFQRTQLGVCSEALAATRPRAASSARDMEIERDLLTSPKDDLEFSIV
RENIREKLNGICDRVVVKPQKTVRKLARVQHLYSQLAGRLTKEDDEYKIL
AALHPTPAVCGLPAEEARLLIKEIESFDRGMYAGPIGFFGGEESEFAVGI
RSALVEKGLGALIYAGTGIVAGSDPSSEWNELDLKISQFTKSIE
Ligand information
Ligand IDISJ
InChIInChI=1S/C10H10O6/c1-5(9(12)13)16-8-4-6(10(14)15)2-3-7(8)11/h2-4,7-8,11H,1H2,(H,12,13)(H,14,15)/t7-,8-/m1/s1
InChIKeyWTFXTQVDAKGDEY-HTQZYQBOSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.2C=C(C(=O)O)O[C@@H]1C=C(C=C[C@H]1O)C(=O)O
CACTVS 3.370O[C@@H]1C=CC(=C[C@H]1OC(=C)C(O)=O)C(O)=O
CACTVS 3.370O[CH]1C=CC(=C[CH]1OC(=C)C(O)=O)C(O)=O
ACDLabs 12.01O=C(O)C1=CC(O/C(C(=O)O)=C)C(O)C=C1
OpenEye OEToolkits 1.7.2C=C(C(=O)O)OC1C=C(C=CC1O)C(=O)O
FormulaC10 H10 O6
Name(3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid;
Chorismic Acid
ChEMBL
DrugBank
ZINCZINC000003869471
PDB chain8w71 Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8w71 Structural basis of chorismate isomerization by Arabidopsis ISOCHORISMATE SYNTHASE1.
Resolution2.121 Å
Binding residue
(original residue number in PDB)
R316 E366 A383 T384 H445 A472 Y496 I514 R515 A529 G530 K549
Binding residue
(residue number reindexed from 1)
R252 E302 A319 T320 H381 A408 Y432 I450 R451 A465 G466 K485
Annotation score5
Enzymatic activity
Enzyme Commision number 5.4.4.2: isochorismate synthase.
Gene Ontology
Molecular Function
GO:0008909 isochorismate synthase activity
GO:0016853 isomerase activity
Biological Process
GO:0006952 defense response
GO:0009409 response to cold
GO:0009617 response to bacterium
GO:0009627 systemic acquired resistance
GO:0009697 salicylic acid biosynthetic process
GO:0010118 stomatal movement
GO:0031348 negative regulation of defense response
GO:0042372 phylloquinone biosynthetic process
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050832 defense response to fungus
GO:0060866 leaf abscission
Cellular Component
GO:0009507 chloroplast
GO:0009536 plastid

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8w71, PDBe:8w71, PDBj:8w71
PDBsum8w71
PubMed38701037
UniProtQ9S7H8|ICS1_ARATH Isochorismate synthase 1, chloroplastic (Gene Name=ICS1)

[Back to BioLiP]

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417