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Structure of PDB 3mo4 Chain A Binding Site BS01

Receptor Information >3mo4 Chain A (length=455) Species: 391904 (Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] AGINLNYLANVRPSSRQLAWQRMEMYAFLHFGMNTMTDREWGLGHEDPAL FNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPW REGKGDLVREVSESARRHGLKFGVYLSPWDRTEESYGKGKAYDDFYVGQL TELLTQYGPIFSVWLDGANGEGKNGKTQYYDWDRYYNVIRSLQPDAVISV CGPDVRWAGNEAGHVRDNEWSVVPRRLRSATVSSQDDDLGSREAVAGYGD NVCWYPAEVDTSIRPGWFYHQSEDDKVMSADQLFDLWLSAVGGNSSLLLN IPPSPEGLLAEPDVQSLKGLGRRVSEFREALASVRCEARTSSASAAAAHL VDGNRDTFWRPDADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRV TGALPDGTERVLGQAGTVGYRRILRFDDVEVSSVTLHVDGSRLAPMISRA AAVRI

Ligand information Ligand ID TYR InChI InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/t8-/m0/s1 InChIKey OUYCCCASQSFEME-QMMMGPOBSA-N SMILES Software SMILES ACDLabs 10.04 O=C(O)C(N)Cc1ccc(O)cc1 OpenEye OEToolkits 1.5.0 c1cc(ccc1C[C@@H](C(=O)O)N)O OpenEye OEToolkits 1.5.0 c1cc(ccc1CC(C(=O)O)N)O CACTVS 3.341 N[CH](Cc1ccc(O)cc1)C(O)=O CACTVS 3.341 N[C@@H](Cc1ccc(O)cc1)C(O)=O Formula C9 H11 N O3 Name TYROSINE ChEMBL CHEMBL925 DrugBank DB00135 ZINC ZINC000000266964 PDB chain 3mo4 Chain A Residue 479 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 3mo4 Bifidobacterium longum subsp. infantis ATCC 15697 alpha-fucosidases are active on fucosylated human milk oligosaccharides. Resolution 1.901 Å Binding residue (original residue number in PDB) H36 H85 D172 Binding residue (residue number reindexed from 1) H30 H79 D166 Annotation score 1

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0004560 alpha-L-fucosidase activity GO:0016787 hydrolase activity

	Biological Process
GO:0005975	carbohydrate metabolic process
GO:0006004	fucose metabolic process
GO:0016139	glycoside catabolic process

	Cellular Component
GO:0005764	lysosome

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