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Structure of PDB 1kg8 Chain A Binding Site BS01

Receptor Information >1kg8 Chain A (length=216) Species: 2242 (Halobacterium salinarum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAF TMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDAD QGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFF GVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSA KVGFGLILLRSRAIFG

Ligand information Ligand ID RET InChI InChI=1S/C20H28O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,15H,7,10,14H2,1-5H3/b9-6+,12-11+,16-8+,17-13+ InChIKey NCYCYZXNIZJOKI-OVSJKPMPSA-N SMILES Software SMILES CACTVS 3.370 CC(=C\C=O)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C ACDLabs 12.01 O=C\C=C(\C=C\C=C(\C=C\C1=C(C)CCCC1(C)C)C)C OpenEye OEToolkits 1.7.0 CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=O)/C)/C OpenEye OEToolkits 1.7.0 CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=O)C)C CACTVS 3.370 CC(=CC=O)C=CC=C(C)C=CC1=C(C)CCCC1(C)C Formula C20 H28 O Name RETINAL ChEMBL CHEMBL81379 DrugBank ZINC ZINC000004228262 PDB chain 1kg8 Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 1kg8 Structure of an early intermediate in the M-state phase of the bacteriorhodopsin photocycle. Resolution 2.0 Å Binding residue (original residue number in PDB) W86 T90 L93 S141 W182 Y185 A215 K216 Binding residue (residue number reindexed from 1) W82 T86 L89 S137 W167 Y170 A200 K201 Annotation score 4

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0005216 monoatomic ion channel activity

	Biological Process
GO:0006811	monoatomic ion transport

	Cellular Component
GO:0016020	membrane

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