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Structure of PDB 5kpv Chain 11 Binding Site BS01

Receptor Information >5kpv Chain 11 (length=151) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLA QRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAM RWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAF A

Ligand information >5kpv Chain 26 (length=1539) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga guggcggacgggugaguaaugucugggaaacugccugauggagggggaua acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg cccgucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu cgggagggcgcuuaccacuuugugauucaugacuggggugaagucguaac aagguaaccguaggggaaccugcgguuggaucaccuccu .......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..... <<<.<<<..<<<..<<.<<..<<<<<<<<<<....>>>>>>>.>>>>>.. >>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<.... .<<<<<......>>>>>......>>.>.....<<<....>>>....<<<< <<..<......>>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<.. <<<<<<<.........>>>>>>>>>>......>>>..<<<<<<<<....> >>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>. ..>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>> >>..<<<<......<<<<....>>>>.....>>>>..<<.<<<<<..... .<.<<<<<<<<.......>>>>>>>>.>........>>>>>....>>.<< <<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>> >>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<< <<<<......<<<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>> ...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......>>>.. ....>>>>>>>>...........<<....>>.>>>>>>>..>>>>.>>>> ...>>>...>>>>....<<<<<<...<<...<<<<.........>>>>.. .>>>>>>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>>> >>>>>>>..<<..))>>.....>>>>>>.>>>.<<<......<<<<.... >>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<< <<<.......<<........>>..........<<<<<<<......<<<<< <<..<<<<<<<....>>>>>>>.............>>>>>.>>.<<<.<< <..<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>.. >>>>>>.....<<<<.<<<<<<....<<..<<<.....>>>>>.....>> >>>>.....<<<<<.....>>>>>........>>>>.........>>>.. .>>>>>>>>>...>>>>>>>....>.>>>>>>>>.....<<<<<<<.... .<<<..<<...<<<....>>>...>>....>>>.....>>>>>>>..... ......<<<<<<<........>>>>>>>..........>>>>>>....<< <<<<<.........>>>>>>>......>>...>>>>>>>>>>.>>....< ..<<.<.<<<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<.. ..>>.>>>>>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...> .....<<<<<<<<<....>>>>>>>>>............

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 5kpv Ribosome•RelA structures reveal the mechanism of stringent response activation. Resolution 4.1 Å Binding residue (original residue number in PDB) P1 R2 R3 R4 R9 K24 N27 L29 M30 D32 G33 K34 K35 T37 I41 R77 R78 R94 R101 R108 K113 M115 Binding residue (residue number reindexed from 1) P1 R2 R3 R4 R9 K24 N27 L29 M30 D32 G33 K34 K35 T37 I41 R77 R78 R94 R101 R108 K113 M115

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0000049 tRNA binding GO:0003723 RNA binding GO:0003729 mRNA binding GO:0003735 structural constituent of ribosome GO:0005515 protein binding GO:0019843 rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0017148	negative regulation of translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0016020	membrane
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component